NAR Molecular Biology Database Collection entry number 894

http://xavante.fmrp.usp.br/mammibase/

de Vasconcelos A.T.R.¹, Guimarães A.C.R.¹, Castelletti C.H.M.¹, Caruso C.S.¹, Ribeiro C.¹, Yokaichiya F.¹, Armôa G.R.G.³, Pereira G.S.P.¹, da Silva I.T.¹, Schrago C.G.², Fernandes A.L.V.¹, da Silveira A.R.¹, Carneiro A.G.¹, Carvalho B.M.¹, Viana C.J.M.¹, Gramkow D.¹, Lima F.J.¹, Corrêa L.G.G.¹, Mudado M.A.¹, Nehab-Hess P.², de Souza R.¹, Corrêa R.L.¹ and Russo C.A.M.²

¹Laboratório Nacional de Computação Científica LNCC/MCT, Petrópolis, RJ, Brazil
²UFRJ, Departamento de Genética, Instituto de Biologia, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, Brazil
³Instituto de Bio-Manguinhos, FIOCRUZ, Rio de Janeiro, RJ, Brazil

Contact atrv@lncc.br

MamMibase, the Mammalian Mitochondrial Genome Database, is a relational database of complete mitochondrial genome sequences of over 100 Mammalian species. The database is useful for phylogenetic analysis, since it allows ready retrieval of nucleotide and amino acid alignments of 13 protein coding mitochondrial genes, based on their parameters values (sequence length, p-distances, base content, transition transversion ratio, gamma).

1. Vasconcelos AT, Guimaraes AC, Castelletti CH, Caruso CS, Ribeiro C, Yokaichiya F, Armoa GR, Pereira Gda S, da Silva IT, Schrago CG, Fernandes AL, da Silveira AR, Carneiro AG, Carvalho BM, Viana CJ, Gramkow D, Lima FJ, Correa LG, Mudado Mde A, Nehab-Hess P, Souza R, Correa RL, Russo CA. (2005) MamMiBase: a mitochondrial genome database for mammalian phylogenetic studies. Bioinformatics 21: 2566-2567.

Go to the abstract in Bioinformatics, 2005, 21, 2566-2567

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